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Transmembrane transport of polycyclic aromatic hydrocarbons by bacteria and functional regulation of

Hongqi Wang, Ruhan Jiang, Dekang Kong, Zili Liu, Xiaoxiong Wu, Jie Xu, Yi Li

《环境科学与工程前沿（英文）》 2020年 第14卷 第1期 doi: 10.1007/s11783-019-1188-2

摘要： Explaintheadsorption, uptake and transmembrane transport of PAHs by bacteria. Analyze functional regulation of membrane proteins inthe transmembrane transport. Proteomics technology such as iTRAQ labeling was used to access expressed proteins. Single cell analysis technology wereused to study the morphological structure. In recent years, increasing research has been conducted on transmembrane transport processes and the mechanisms behind the microbial breakdown of polycyclic aromatic hydrocarbons (PAHs), including the role of membrane proteins in transmembrane transport and the mode of transmission. This article explains the adsorption, uptake and transmembrane transport of PAHs by bacteria, the regulation of membrane protein function during the transmembrane transport. There are three different regulation mechanisms for uptake, depending on the state and size of the oil droplets relative to the size of the microbial cells, which are (i) direct adhesion, (ii) emulsification and pseudosolubilization, and (iii) interfacial uptake. Furthermore, two main transmembrane transport modes are introduced, which are (i) active transport and (ii) passive uptake and active efflux mechanism. Meanwhile, introduce the proteomics and single cell analysis technology used to address these areas of research, such as Isobaric tags for relative and absolute quantitation (iTRAQ) technology and Nano Secondary ion mass spectrometry (Nano-SIMS). Additionally, analyze the changes in morphology and structure and the characteristics of microbial cell membranes in the process of transmembrane transport. Finally, recognize the microscopic mechanism of PAHs biodegradation in terms of cell and membrane proteins are of great theoretical and practical significance for understanding the factors that influence the efficient degradation of PAHs contaminants in soil and for remediating the PAHs contamination in this area with biotechnology.

关键词： Polycyclic aromatic hydrocarbons     Transmembrane transport     Adsorption and uptake of hydrocarbons     Proteomics     Functional regulation of membrane protein     Single cell analysis technology    

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Dissipation of polycyclic aromatic hydrocarbons and microbial activity in a field soil planted with perennial

Dengqiang FU, Ying TENG, Yuanyuan SHEN, Mingming SUN, Chen TU, Yongming LUO, Zhengao LI, Peter CHRISTIE

《环境科学与工程前沿（英文）》 2012年 第6卷 第3期   页码 330-335 doi: 10.1007/s11783-011-0366-7

摘要： Dissipation and plant uptake of polycyclic aromatic hydrocarbons (PAHs) in contaminated agricultural soil planted with perennial ryegrass were investigated in a field experiment. After two seasons of grass cultivation the mean concentration of 12 PAHs in soil decreased by 23.4% compared with the initial soil. The 3-, 4-, 5-, and 6-ring PAHs were dissipated by 30.9%, 25.5%, 21.2%, and 16.3% from the soil, respectively. Ryegrass shoots accumulated about 280 μg·kg , shoot dry matter biomass reached 2.48 × 10 kg·ha , and plant uptake accounted for about 0.99% of the decrease in PAHs in the soil. Significantly higher soil enzyme activities and microbial community functional diversity were observed in planted soil than that in the unplanted control. The results suggest that planting ryegrass may promote the dissipation of PAHs in long-term contaminated agricultural soil, and plant-promoted microbial degradation may be a main mechanism of phytoremediation.

关键词： perennial ryegrass     polycyclic aromatic hydrocarbon bioremediation     plant uptake     soil microbial activity    

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Comments on “Prediction on CO uptake of recycled aggregate concrete”, Frontiers of Structural and Civil

《结构与土木工程前沿（英文）》 2021年 第15卷 第6期   页码 1504-1506 doi: 10.1007/s11709-021-0782-0

摘要： A methodology to compute the CO2 uptake of recycled aggregate concrete is proposed in the commented paper. Besides some typos in several formulas, it is found that the approach to estimate the specific surface area of the recycled aggregates is not correct. This issue has some impact in the conclusions of the commented paper. Therefore, aiming to improve the understanding, accuracy and findings of the commented paper, an alternative approach to estimate the specific surface area of the recycled aggregates, as well as an erratum of the formulas and revised conclusions are suggested.
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strong> PYR-1 endowed with an enhanced activity of dihydroxylation of high-molecular-weight polyaromatic hydrocarbons

Yiquan Wu, Ying Xu, Ningyi Zhou

《环境科学与工程前沿（英文）》 2020年 第14卷 第1期 doi: 10.1007/s11783-019-1193-5

摘要： • Mycobacterium vanbaalenii PYR-1 utilizes PAHs at different rates. • Both NidA3B3 and FNidA3B3 catalyze high-molecular-weight PAHs dihydroxylation. • NidA3B3 shows an enhanced activity with an endogenous electron transport chain. • FNidA3B3 has an enhanced activity by 50% approximately compared with NidA3B3. • FNidA3B3/NidA3B3 and NidAB in the same strain come from different ancestors. NidA3B3 is a terminal dioxygenase whose favorable substrates are high-molecular-weight polyaromatic hydrocarbons (PAHs) from Mycobacterium vanbaalenii PYR-1, a powerful PAHs degradation strain. NidA3B3 was reported to incorporate a dioxygen into the benzene ring of PAHs when equipped with an exogenous electron transport chain components PhdCD from Nocardioides sp. strain KP7 by biotransformation, but this enzyme system was not particularly efficient. In this study, strain PYR-1 was confirmed to utilize four different PAHs at different growth rates. When PhtAcAd, an endogenous electron transport chain of a phthalate dioxygenase system, was substituted for PhdCD to couple with NidA3B3, the specific activity to convert phenanthrene by strain BL21(DE3) [pNidA3B3-PhAcAd] was 0.15±0.03 U/mg, but the specific activity of strain BL21(DE3) [pNidA3B3-PhdCD] was only 0.025±0.006 U/mg. In addition, FNidA3, encoded by a newly defined ORF, has a prolonged 19-amino acid sequence at the N-terminal compared with NidA3. FNidA3B3 increased the activity by 50% approximately than NidA3B3 when using PhtAcAd. Components of the electron transport chain PhtAc and PhtAd were purified and characterized. The Km, kcat, kcat/Km values of the PhtAd were 123±26.9 M, 503±49.9 min−1, 4.1 M−1·min−1, respectively. And the Km, kcat, kcat/Km values of the ferredoxin PhtAc were 52.5±9.7 M, 3.8±0.19 min−1 and 0.07 M−1·min−1, respectively. Basing on the phylogenetic analysis, NidA3/FNidA3 were far from its isoenzyme NidA from the same strain. Combining their primary differences of transcriptional pattern in vivo, it indicated that the functionally similar Rieske dioxygenases NidA3B3/FNidA3B3 and NidAB might originate from different ancestors.

关键词： Biodegradation     polyaromatic hydrocarbons     biotransformation     ring-hydroxylating dioxygenase system    

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Organic and inorganic phosphorus uptake by bacteria in a plug-flow microcosm

Jinbo ZHAO, Xuehua LIU

《环境科学与工程前沿（英文）》 2013年 第7卷 第2期   页码 173-184 doi: 10.1007/s11783-013-0494-3

摘要： Phosphorus (P) is a vital nutrient for sustaining natural water productivity. Both particulate and dissolved forms of organic and inorganic P are potentially important sources of bioavailable P for primary and secondary producers. A microcosm system to imitate the bacterial community in Plym river sediment and pore water is described and bacterial uptake rates for inorganic and organic phosphorus are presented in this paper. The aim of this study was to investigate the uptake of two organic phosphorus compounds (phytic acid and D-glucose-6-phosphate) by freshwater bacteria. The bioreactors comprise glass columns packed with two types of small glass beads on which bacterial biofilm can develop. The glass beads with different porosity were introduced to simulate River SPM. The selected P compounds spiked into the inflow of the microcosm, and measured the step change of P concentration in the outflow to investigate the behavior of bacterial uptake of nutrients. The results showed that organic phosphorus was converted into inorganic phosphorus but the conversion rate depended on the type of phosphorus species. One experiment suggested that phytic acid (refractory) could displace phosphate from the biofilm surface; the other experiment showed that D-glucose-6-phosphate (labile) could be hydrolysed and utilized easily by the bacteria. The results also suggested that bacteria might break down the C-P bonds to utilize the carbon. Further experiments should investigate the effect of varying the C:N:P ratio in the microcosm system to determine which nutrient limits bacteria uptake.

关键词： organic phosphorus     bacteria     uptake    

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Migration and fate of polycyclic aromatic hydrocarbons in bioretention systems with different media:

《环境科学与工程前沿（英文）》 2023年 第18卷 第4期 doi: 10.1007/s11783-024-1802-9

摘要：

● Bioretention systems showed > 92% load reduction rates of PAHs.

关键词： Bioretention     Polycyclic aromatic hydrocarbons     HYDRUS-1D     Model simulation     Migration    

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Enrichment and transfer of polycyclic aromatic hydrocarbons (PAHs) through dust aerosol generation from

《环境科学与工程前沿（英文）》 2023年 第17卷 第1期 doi: 10.1007/s11783-023-1610-7

摘要：

● Compositional patterns of PAHs in dust aerosol vary from soil during dust generation.

关键词： Dust aerosols     Enrichment factors (EFs)     Polycyclic aromatic hydrocarbons (PAHs)    

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The implications of planting mode on cadmium uptake and remobilization in rice: Field experiments across

《环境科学与工程前沿（英文）》 2021年 第15卷 第6期 doi: 10.1007/s11783-021-1431-5

摘要：

•Direct seeding (DS) method led to more distributed Cd in aerial parts of rice.

关键词： Cadmium     Genotypes     Growth stages     Micro X-ray fluorescence     Planting mode    

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Effect of ambient polycyclic aromatic hydrocarbons and nicotine on the structure of Aβ protein

《环境科学与工程前沿（英文）》 2023年 第17卷 第2期 doi: 10.1007/s11783-023-1615-2

摘要：

● B[a]P, nicotine and phenanthrene molecules altered the secondary structure of Aβ42.

关键词： Polycyclic aromatic hydrocarbons     Nicotine     toxicology     Aβ42 peptide     Alzheimer’s disease     Molecular dynamics simulations     Environmental pollution    

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Denitrification and phosphorus uptake by DPAOs using nitrite as an electron acceptor by step-feed strategies

Bin MA, Shuying WANG, Guibing ZHU, Shijian GE, Junmin WANG, Nanqi Ren, Yongzhen PENG

《环境科学与工程前沿（英文）》 2013年 第7卷 第2期   页码 267-272 doi: 10.1007/s11783-012-0439-2

摘要： Denitrifying phosphorus accumulating organisms (DPAOs) using nitrite as an electron acceptor can reduce more energy. However, nitrite has been reported to have an inhibition on denitrifying phosphorus removal. In this study, the step-feed strategy was proposed to achieve low nitrite concentration, which can avoid or relieve nitrite inhibition. The results showed that denitrification rate, phosphorus uptake rate and the ratio of the phosphorus uptaken to nitrite denitrified (anoxic P/N ratio) increased when the nitrite concentration was 15 mg·L after step-feeding nitrite. The maximum denitrification rate and phosphorus uptake rate was 12.73 mg and 18.75 mg , respectively. These rates were higher than that using nitrate (15 mg·L ) as an electron acceptor. The maximum anoxic P/N ratio was 1.55 mg . When the nitrite concentration increased from 15 to 20 mg after addition of nitrite, the anoxic phosphorus uptake was inhibited by 64.85%, and the denitrification by DPAOs was inhibited by 61.25%. Denitrification rate by DPAOs decreased gradually when nitrite (about 20 mg·L ) was added in the step-feed SBR. These results indicated that the step-feed strategy can be used to achieve denitrifying phosphorus removal using nitrite as an electron acceptor, and nitrite concentration should be maintained at low level (<15 mg·L in this study).

关键词： denitrifying phosphate accumulating organisms (DPAOs)     denitrification     phosphorus uptake     nitrite     step-feed     enhanced biological phosphorus removal    

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Electrochemical reduction characteristics and the mechanism of chlorinated hydrocarbons at the copper

XU Wenying, GAO Tingyao, ZHOU Rongfeng, MA Lumin

《环境科学与工程前沿（英文）》 2007年 第1卷 第2期   页码 207-212 doi: 10.1007/s11783-007-0036-y

摘要： The electrochemical reduction characteristics of chlorinated hydrocarbons were investigated by cyclic voltammetry technique. The reduction mechanism and activity of the chlorinated hydrocarbons at the copper electrode were explored. The relationship between the structure of chlorinated hydrocarbons and their reductive activity were discussed. The experimental results showed that chlorinated alkanes and a portion of chlorinated aromatic hydrocarbons could be reduced directly at the copper electrode. However, chlorinated aromatic hydrocarbons were not easy to reduce at the copper electrode. The results provided a theoretical basis for the catalyzed iron inner electrolysis method.

关键词： electrolysis     chlorinated     relationship     mechanism     voltammetry technique    

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Effects of nitrite on phosphate uptake in anaerobic-oxic process

LI Jie, XIONG Biyong, ZHANG Shude, YANG Hong, ZHANG Jie

《环境科学与工程前沿（英文）》 2007年 第1卷 第1期   页码 39-42 doi: 10.1007/s11783-007-0007-3

摘要： An anaerobic-oxic (A/O) biological phosphorus removal reactor was operated to study the effect of nitrite on phosphate uptake. The phosphorus uptake profile was determined under different operating conditions. The results indicated that in addition to oxygen and nitrate (DPB, nitrate denitrifying phosphorus removal), to some extent, nitrite could also serve as an electron acceptor to achieve nitrite denitrifying phosphorus removal (DPB). The quantity and rate of phosphorus uptake of DPB, however, were evidently lower than that of DPB The experiment results revealed that nitrite would bring toxic action to phosphate-accumulating organisms (PAOs) when NO-N"e93.7 mg/L. The nitrite existing in the anoxic reactor made no difference to the quantity and rate of denitrifying phosphorus removal, but it could reduce the consumption of nitrate. Moreover, the data showed that the aerobic phosphate uptake of DPB was lower than that of anaerobic phosphorus-released sludge in a traditional A/O process. However, there was not much difference between these two kinds of sludge in terms of the total phosphorus uptake quantity and the effluent quality.

关键词： effluent     PAOs     experiment     phosphate-accumulating     phosphorus removal    

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Design of nanocarriers for efficient cellular uptake and endosomal release of small molecule and nucleic

Vaibhav Mundra, Ram I. Mahato

《化学科学与工程前沿（英文）》 2014年 第8卷 第4期   页码 387-404 doi: 10.1007/s11705-014-1457-3

摘要： There are many challenges in developing efficient and target specific delivery systems of small molecule and nucleic acid drugs. Cell membrane presents one of the major barriers for the penetration of hydrophilic macromolecules across the plasma membrane. Nanocarriers have been designed to enhance their cellular uptake via endocytosis but following their cellular uptake, endosomal escape is the rate limiting step which restricts the value associated with the enhanced uptake by nanocarriers. Viruses are an excellent model for efficient cytosolic delivery by nanocarriers. Viruses exploit intracellular cues to release the genome to cytosol. In this review, we first discuss different endocytic uptake pathways and endosomal escape mechanisms. We then summarize the existing tools for studying the intracellular trafficking of nanocarriers. Finally, we highlight the important design elements of recent virus-based nanocarriers for efficient cellular uptake and endosomal escape.

关键词： nanocarrier     cellular uptake     endosomal release     nucleic acid drug    

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Progress in hydrogen enriched hydrocarbons combustion and engine applications

Zuohua HUANG, Jinhua WANG, Erjiang HU, Chenglong TANG, Yingjia ZHANG

《能源前沿（英文）》 2014年 第8卷 第1期   页码 73-80 doi: 10.1007/s11708-013-0287-1

摘要： The paper summarized the work on hydrogen enriched hydrocarbons combustion and its application in engines. The progress and understanding on laminar burning velocity, flame instability, flame structure flame and chemical kinetics were presented. Based on fundamental combustion, both homogeneous spark-ignition engine and direct-injection spark-ignition engine fueled with natural gas-hydrogen blends were conducted and the technical route of natural gas-hydrogen combined with exhaust gas recirculation was proposed which experimentally demonstrated benefits on both thermal efficiency improvement and emissions reduction.

关键词： hydrogen enriched hydrocarbon combustion     fundamental study     engine application    

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High-precision standard enthalpy of formation for polycyclic aromatic hydrocarbons predicting from general

《化学科学与工程前沿（英文）》 2022年 第16卷 第12期   页码 1743-1750 doi: 10.1007/s11705-022-2184-9

摘要： The standard enthalpy of formation is an important predictor of the reaction heat of a chemical reaction. In this work, a high-precision method was developed to calculate accurate standard enthalpies of formation for polycyclic aromatic hydrocarbons based on the general connectivity based hierarchy (CBH) with the discrete correction of atomization energy. Through a comparison with available experimental findings and other high-precision computational results, it was found that the present method can give a good description of enthalpy of formation for polycyclic aromatic hydrocarbons. Since CBH schemes can broaden the scope of application, this method can be used to investigate the energetic properties of larger polycyclic aromatic hydrocarbons to achieve a high-precision calculation at the CCSD(T)/CBS level. In addition, the energetic properties of CBH fragments can be accurately calculated and integrated into a database for future use, which will increase computational efficiency. We hope this work can give new insights into the energetic properties of larger systems.

关键词： standard enthalpy of formation     polycyclic aromatic hydrocarbons     connectivity based hierarchy     high-precision calculation    

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标题 作者 时间 类型 操作

Transmembrane transport of polycyclic aromatic hydrocarbons by bacteria and functional regulation of

Hongqi Wang, Ruhan Jiang, Dekang Kong, Zili Liu, Xiaoxiong Wu, Jie Xu, Yi Li

期刊论文

Dissipation of polycyclic aromatic hydrocarbons and microbial activity in a field soil planted with perennial

Dengqiang FU, Ying TENG, Yuanyuan SHEN, Mingming SUN, Chen TU, Yongming LUO, Zhengao LI, Peter CHRISTIE

期刊论文

Comments on “Prediction on CO uptake of recycled aggregate concrete”, Frontiers of Structural and Civil

期刊论文

strong> PYR-1 endowed with an enhanced activity of dihydroxylation of high-molecular-weight polyaromatic hydrocarbons

Yiquan Wu, Ying Xu, Ningyi Zhou

期刊论文

Organic and inorganic phosphorus uptake by bacteria in a plug-flow microcosm

Jinbo ZHAO, Xuehua LIU

期刊论文

Migration and fate of polycyclic aromatic hydrocarbons in bioretention systems with different media:

期刊论文

Enrichment and transfer of polycyclic aromatic hydrocarbons (PAHs) through dust aerosol generation from

期刊论文

The implications of planting mode on cadmium uptake and remobilization in rice: Field experiments across

期刊论文

Effect of ambient polycyclic aromatic hydrocarbons and nicotine on the structure of Aβ protein

期刊论文

Denitrification and phosphorus uptake by DPAOs using nitrite as an electron acceptor by step-feed strategies

Bin MA, Shuying WANG, Guibing ZHU, Shijian GE, Junmin WANG, Nanqi Ren, Yongzhen PENG

期刊论文

Electrochemical reduction characteristics and the mechanism of chlorinated hydrocarbons at the copper

XU Wenying, GAO Tingyao, ZHOU Rongfeng, MA Lumin

期刊论文

Effects of nitrite on phosphate uptake in anaerobic-oxic process

LI Jie, XIONG Biyong, ZHANG Shude, YANG Hong, ZHANG Jie

期刊论文

Design of nanocarriers for efficient cellular uptake and endosomal release of small molecule and nucleic

Vaibhav Mundra, Ram I. Mahato

期刊论文

Progress in hydrogen enriched hydrocarbons combustion and engine applications

Zuohua HUANG, Jinhua WANG, Erjiang HU, Chenglong TANG, Yingjia ZHANG

期刊论文

High-precision standard enthalpy of formation for polycyclic aromatic hydrocarbons predicting from general

期刊论文